So, I upgraded to a AFE Header/Manafold. Its a good product, but before I go to a new manifold, a few things to check.
On the LJ I am working on I pulled the intake and exhaust manifolds. The bolts/studs that hold on the manifold were all but rusted away. The manifolds are held on by common nuts and cone washers. The washers can expand and contract as I understand. So after many years these washers loose their ability to do their job and the bolts/studs deteriorate as well. I know mine were not serviceable again after I pulled them off. They were all but rusted through.
My thinking is this may be your issue more than the actual manifold being cracked. It is at least worth checking before investing hundreds into a next stainless steel header. I would go ahead and pull a bolt or two and see if they seem to be doing the job. Might even order replacements all around and just do that first without taking anything off. This would be fairly straight forward except for the front and rear nuts.
As far as doing the whole job, it's a pain in the ass. You may as well do the cats while you are there, heck just a new exhaust, you will be taking most of it apart anyway. I would take the hood off, or at least prop it on the windshield, take the fender off and even remove at least the upper DS control arm for extra clearance. I did mine while converting to a 3 link front so this stuff was out of the way, so guessing here on a stock rig.
Oh, one more thing I ran into, the DS hit the new AFE setup on close to full bump. I have not figured that out yet, I also have a 60 up front now. Ill figure that out when I get back to the jeep project. Moved into a new house a few months ago and the jeeps have taken quite the back seat to everything else.
So, basically, make sure the fasteners holding on the manifolds are in great shape, then go from there.